2,506 research outputs found
Interaction Study of MADS-Domain Proteins in Tomato
MADS-domain proteins are important transcription
factors involved in many biological processes of
plants. Interactions between MADS-domain proteins
are essential for their functions. In tomato (Solanum
lycopersicum), the number of MIKCc-type MADSdomain
proteins identified has totalled 36, but a largescale
interaction assay is lacking. In this study, 22
tomato MADS-domain proteins were selected from six
functionally important subfamilies of the MADS-box
gene family, to create the first large-scale tomato
protein interaction network. Compared with Arabidopsis
and petunia (Petunia hybrida), protein interaction
patterns in tomato displayed both conservation and
divergence. The majority of proteins that can be
identified as putative orthologues exhibited conserved
interaction patterns, and modifications were mostly
found in genes underlining traits unique to tomato.
JOINTLESS and RIN, characterized for their roles in
abscission zone development and fruit ripening, respectively,
showed enlarged interaction networks in
comparison with their Arabidopsis and petunia counterparts.
Novel interactions were also found for members
of the expanded subfamilies, such as those
represented by AP1/FUL and AP3/PI MADS-domain
proteins. In search for higher order complexes, TM5
was found to be the preferred bridge among the five
SEP-like proteins. Additionally, 16 proteins with the
MADS-domain removed were used to assess the role
of the MADS-domain in protein–protein interactions.
The current work provides important knowledge for
further functional and evolutionary study of the MADSbox
genes in tomato
The Angular Momentum Content and Evolution of Class I and Flat-Spectrum Protostars
We report on the angular momentum content of heavily embedded protostars
based on our analysis of the projected rotation velocities (v sin i s) of 38
Class I/flat spectrum young stellar objects presented by Doppmann et al (2005).
After correcting for projection effects, we find that infrared-selected Class
I/flat spectrum objects rotate significantly more quickly (median equatorial
rotation velocity ~ 38 km/sec) than Classical T Tauri stars (CTTSs; median
equatorial rotation velocity ~ 18 km/sec) in the Rho Ophiuchi and
Taurus-Aurigae regions. The detected difference in rotation speeds between
Class I/flat spectrum sources and CTTSs proves difficult to explain without
some mechanism which transfers angular momentum out of the protostar between
the two phases. Assuming Class I/flat spectrum sources possess physical
characteristics (M_*,R_*,B_*) typical of pre-main sequence stars, fully disk
locked Class I objects should have co-rotation radii within their protostellar
disks that match well (within 30%) with the predicted magnetic coupling radii
of Shu et al (1994). The factor of two difference in rotation rates between
Class I/flat spectrum and CTTS sources, when interpreted in the context of disk
locking models, also imply a factor of 5 or greater difference in mass
accretion rates between the two phases.Comment: 13 pages, 6 figures. Accepted for publication in the Astronomical
Journal (tentatively for June 2005 edition
Virtual Machine Support for Many-Core Architectures: Decoupling Abstract from Concrete Concurrency Models
The upcoming many-core architectures require software developers to exploit
concurrency to utilize available computational power. Today's high-level
language virtual machines (VMs), which are a cornerstone of software
development, do not provide sufficient abstraction for concurrency concepts. We
analyze concrete and abstract concurrency models and identify the challenges
they impose for VMs. To provide sufficient concurrency support in VMs, we
propose to integrate concurrency operations into VM instruction sets.
Since there will always be VMs optimized for special purposes, our goal is to
develop a methodology to design instruction sets with concurrency support.
Therefore, we also propose a list of trade-offs that have to be investigated to
advise the design of such instruction sets.
As a first experiment, we implemented one instruction set extension for
shared memory and one for non-shared memory concurrency. From our experimental
results, we derived a list of requirements for a full-grown experimental
environment for further research
Search for right-handed W bosons in top quark decay
We present a measurement of the fraction f+ of right-handed W bosons produced
in top quark decays, based on a candidate sample of events in the
lepton+jets decay mode. These data correspond to an integrated luminosity of
230pb^-1, collected by the DO detector at the Fermilab Tevatron
Collider at sqrt(s)=1.96 TeV. We use a constrained fit to reconstruct the
kinematics of the and decay products, which allows for the
measurement of the leptonic decay angle for each event. By comparing
the distribution from the data with those for the expected
background and signal for various values of f+, we find
f+=0.00+-0.13(stat)+-0.07(syst). This measurement is consistent with the
standard model prediction of f+=3.6x10^-4.Comment: Submitted to Physical Review D Rapid Communications 7 pages, 3
figure
Measurement of the B0_s semileptonic branching ratio to an orbitally excited D_s** state, Br(B0_s -> Ds1(2536) mu nu)
In a data sample of approximately 1.3 fb-1 collected with the D0 detector
between 2002 and 2006, the orbitally excited charm state D_s1(2536) has been
observed with a measured mass of 2535.7 +/- 0.6 (stat) +/- 0.5 (syst) MeV via
the decay mode B0_s -> D_s1(2536) mu nu X. A first measurement is made of the
branching ratio product Br(b(bar) -> D_s1(2536) mu nu X).Br(D_s1(2536)->D*
K0_S). Assuming that D_s1(2536) production in semileptonic decay is entirely
from B0_s, an extraction of the semileptonic branching ratio Br(B0_s ->
D_s1(2536) mu nu X) is made.Comment: 7 pages, 2 figures, LaTeX, version with minor changes as accepted by
Phys. Rev. Let
Measurement of Semileptonic Branching Fractions of B Mesons to Narrow D** States
Using the data accumulated in 2002-2004 with the DO detector in
proton-antiproton collisions at the Fermilab Tevatron collider with
centre-of-mass energy 1.96 TeV, the branching fractions of the decays B ->
\bar{D}_1^0(2420) \mu^+ \nu_\mu X and B -> \bar{D}_2^{*0}(2460) \mu^+ \nu_\mu X
and their ratio have been measured: BR(\bar{b}->B) \cdot BR(B-> \bar{D}_1^0
\mu^+ \nu_\mu X) \cdot BR(\bar{D}_1^0 -> D*- pi+) =
(0.087+-0.007(stat)+-0.014(syst))%; BR(\bar{b}->B)\cdot BR(B->D_2^{*0} \mu^+
\nu_\mu X) \cdot BR(\bar{D}_2^{*0} -> D*- \pi^+) =
(0.035+-0.007(stat)+-0.008(syst))%; and (BR(B -> \bar{D}_2^{*0} \mu^+ \nu_\mu
X)BR(D2*0->D*- pi+)) / (BR(B -> \bar{D}_1^{0} \mu^+ \nu_\mu X)\cdot
BR(\bar{D}_1^{0}->D*- \pi^+)) = 0.39+-0.09(stat)+-0.12(syst), where the charge
conjugated states are always implied.Comment: submitted to Phys. Rev. Let
Measurement of the Lifetime Difference in the B_s^0 System
We present a study of the decay B_s^0 -> J/psi phi We obtain the CP-odd
fraction in the final state at time zero, R_perp = 0.16 +/- 0.10 (stat) +/-
0.02 (syst), the average lifetime of the (B_s, B_sbar) system, tau (B_s^0)
=1.39^{+0.13}_{-0.16} (stat) ^{+0.01}_{-0.02} (syst) ps, and the relative width
difference between the heavy and light mass eigenstates, Delta Gamma/Gamma =
(Gamma_L - Gamma_H)/Gamma =0.24^{+0.28}_{-0.38} (stat) ^{+0.03}_{-0.04} (syst).
With the additional constraint from the world average of the B_s^0$lifetime
measurements using semileptonic decays, we find tau (B_s^0)= 1.39 +/- 0.06 ~ps
and Delta Gamma/\Gamma = 0.25^{+0.14}_{-0.15}. For the ratio of the B_s^0 and
B^0 lifetimes we obtain tau(B_s^0)/tau(B^0)} = 0.91 +/- 0.09 (stat) +/- 0.003
(syst).Comment: submitted to Phys. Rev. Lett. FERMILAB-PUB-05-324-
Simultaneous measurement of the ratio B(t->Wb)/B(t->Wq) and the top quark pair production cross section with the D0 detector at sqrt(s)=1.96 TeV
We present the first simultaneous measurement of the ratio of branching
fractions, R=B(t->Wb)/B(t->Wq), with q being a d, s, or b quark, and the top
quark pair production cross section sigma_ttbar in the lepton plus jets channel
using 0.9 fb-1 of ppbar collision data at sqrt(s)=1.96 TeV collected with the
D0 detector. We extract R and sigma_ttbar by analyzing samples of events with
0, 1 and >= 2 identified b jets. We measure R = 0.97 +0.09-0.08 (stat+syst) and
sigma_ttbar = 8.18 +0.90-0.84 (stat+syst)} +/-0.50 (lumi) pb, in agreement with
the standard model prediction.Comment: submitted to Phys.Rev.Letter
Search for Large Extra Spatial Dimensions in Dimuon Production with the D0 Detector
We present the results of a search for the effects of large extra spatial
dimensions in collisions at 1.96 TeV in events
containing a pair of energetic muons. The data correspond to 246 \ipb of
integrated luminosity collected by the \D0 experiment at the Fermilab Tevatron
Collider. Good agreement with the expected background was found, yielding no
evidence for large extra dimensions. We set 95% C.L. lower limits on the
fundamental Planck scale between 0.85 TeV and 1.27 TeV within several
formalisms. These are the most stringent limits achieved in the dimuon channel
to date.Comment: 8 pages, 3 figures, 1 table. Published in Phys. Rev. Lett. Minor
changes in v2 to match the published versio
Search for R-parity violating supersymmetry via the LLE couplings lambda_{121}, lambda_{122} or lambda_{133} in ppbar collisions at sqrt(s)=1.96 TeV
A search for gaugino pair production with a trilepton signature in the
framework of R-parity violating supersymmetry via the couplings lambda_121,
lambda_122, or lambda_133 is presented. The data, corresponding to an
integrated luminosity of L~360/pb, were collected from April 2002 to August
2004 with the D0 detector at the Fermilab Tevatron Collider, at a
center-of-mass energy of sqrt(s)=1.96 TeV. This analysis considers final states
with three charged leptons with the flavor combinations eel, mumul, and eetau
(l=e or mu). No evidence for supersymmetry is found and limits at the 95%
confidence level are set on the gaugino pair production cross section and lower
bounds on the masses of the lightest neutralino and chargino are derived in two
supersymmetric models.Comment: 9 pages, 4 figures (fig2 includes 3 subfigures
- …